Journal Article Haplotype motifs: an algorithmic approach to locating evolutionarily conserved patterns in haploid sequences. 2003 • Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference • 2:306-314 Schwartz R
Conference Haplotypes and informative SNP selection algorithms: Don't block out information 2003 • Proceedings of the Annual International Conference on Computational Molecular Biology, RECOMB • 19-27 Bafna V, Halldórsson BV, Schwartz R, Clark AG, Istrail S
Journal Article Robustness of inference of haplotype block structure 2003 • Journal of Computational Biology • 10(1):13-19 Schwartz R, Halldórsson BV, Bafna V, Clark AG, Istrail S
Journal Article Algorithmic strategies for the single nucleotide polymorphism haplotype assembly problem. 2002 • Briefings in Bioinformatics • 3(1):23-31 Lippert R, Schwartz R, Lancia G, Istrail S
Conference Methods for inferring block-wise ancestral history from haploid sequences the haplotype coloring problem 2002 • Lecture Notes in Computer Science • 2452:44-59 Schwartz R, Clark AG, Sorin I
Journal Article Frequencies of amino acid strings in globular protein sequences indicate suppression of blocks of consecutive hydrophobic residues 2001 • Protein Science • 10(5):1023-1031 Schwartz R, Istrail S, King J
Journal Article Racial profiling in medical research 2001 • New England Journal of Medicine • 344(18):1392-1393 Schwartz RS
Conference SNPs problems, complexity, and algorithms 2001 • Lecture Notes in Computer Science • 2161:182-193 Lancia G, Bafna V, Istrail S, Lippert R, Schwartz R
Journal Article The sequence of the human genome 2001 • Science • 291(5507):1304-+ Schwartz R, and others
Conference Visualization challenges for a new cyber-pharmaceutical computing paradigm 2001 • Proceedings - IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics • 7-18 Turner RJ, Chaturvedi K, Edwards NJ, Fasulo D, Halpern AL, Huson DH, Kohlbacher O, Miller JR, Reinert K, Remington KA, Schwartz R, Walenz B, Yooseph S, Istrail S
Journal Article Whole proteome pl values correlate with subcellular localizations of proteins for organisms within the three domains of life 2001 • Genome Research • 11(5):703-709 Schwartz R, Ting CS, King J
Journal Article "Local rules" theory applied to polyomavirus polymorphic capsid assemblies 2000 • Virology • 268(2):461-470 Schwartz R, Garcea RL, Berger B
Journal Article Local rule mechanism for selecting icosahedral shell geometry 2000 • Discrete Applied Mathematics • 104(1-3):97-111 Berger B, King J, Schwartz R, Shor PW
Journal Article Lattice simulations of aggregation funnels for protein folding 1999 • Journal of Computational Biology • 6(2):143-162 Istrail S, Schwartz R, King J
Journal Article Towards a topological description of poorly-crystalline networks 1999 • ADVANCED MATERIALS FOR THE 21ST CENTURY: THE 1999 JULIA R WEERTMAN SYMPOSIUM • 475-486 Hobbs LW, Jesurum CE, Coventry A, Pulim V, Schwartz R, Berger B
Journal Article Local rules simulation of the kinetics of virus capsid self-assembly 1998 • Biophysical Journal • 75(6):2626-2636 Schwartz R, Shor PW, Prevelige PE, Berger B
Preprint A Simulator for Somatic Evolution Study Design 2022.05.01.487551 Srivatsa A, Lei H, Schwartz R
Preprint ConTreeDP: A consensus method of tumor trees based on maximum directed partition support problem 2021.10.13.463978 Fu X, Schwartz R
Preprint Deconvolution and phylogeny inference of structural variations in tumor genomic samples 257014 Eaton J, Wang J, Schwartz R
Journal Article Improving personalized prediction of cancer prognoses with clonal evolution models 761510 Tao Y, Rajaraman A, Cui X, Cui Z, Eaton J, Kim H, Ma J, Schwartz R
Preprint Interpretable deep learning for chromatin-informed inference of transcriptional programs driven by somatic alterations across cancers 2021.09.07.459263 Tao Y, Ma X, Palmer D, Schwartz R, Lu X, Osmanbeyoglu HU
Preprint Marker selection strategies for circulating tumor DNA guided by phylogenetic inference 2024.03.21.585352 Fu X, Luo Z, Deng Y, LaFramboise W, Bartlett D, Schwartz R
Preprint Modeling the effect of spatial structure on solid tumor evolution and ctDNA composition 2023.11.10.566658 Rachman T, Bartlett D, Laframboise W, Wagner P, Schwartz R, Carja O
Preprint Optimizing Design of Genomics Studies for Clonal Evolution Analysis 2024.03.14.585055 Srivatsa A, Schwartz R
Preprint Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV) 2023.12.07.570724 Bristy NA, Fu X, Schwartz R
