Journal Article Reply to 'Complexity of molecular crowding in cell-free enzymatic reaction networks' 2014 • Nature Nanotechnology • 9(6):407-+ Tan C, Saurabh S, Bruchez MP, Schwartz R, LeDuc P
Journal Article Single-Cell Genetic Analysis Reveals Insights into Clonal Development of Prostate Cancers and Indicates Loss of PTEN as a Marker of Poor Prognosis 2014 • American Journal of Pathology • 184(10):2671-2686 Heselmeyer-Haddad KM, Garcia LYB, Bradley A, Hernandez L, Hu Y, Habermann JK, Dumke C, Thorns C, Perner S, Pestova E, Burke C, Chowdhury SA, Schwartz R, Schaeffer AA, Paris PL, Ried T
Journal Article A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion 2013 • Algorithms for Molecular Biology • 8: Catanzaro D, Ravi R, Schwartz R
Conference Applying Cellular Crowding Models to Simulations of Virus Capsid Assembly In Vitro 2013 • Biophysical Journal • 104(2):413A-413A Smith GR, Xie L, Lee B, Schwartz R
Journal Article Coalescent-Based Method for Learning Parameters of Admixture Events from Large-Scale Genetic Variation Data 2013 • IEEE/ACM Transactions on Computational Biology and Bioinformatics • 10(5):1137-1149 Tsai M-C, Blelloch G, Ravi R, Schwartz R
Conference Improving Inference of Rate Parameters for Viral Capsid Assembly Systems 2013 • Biophysical Journal • 104(2):413A-413A Xie L, Smith GR, Schwartz R
Conference Inference of tumor phylogenetic markers from large copy number datasets. 2013 • Cancer Research • 73(8): Subramanian A, Shackney S, Schwartz R
Conference Modeling Mechanotransduction Signaling through Actin Filament Network Deformation Linked to Biochemical Response 2013 • Biophysical Journal • 104(2):317A-318A Kang J, Puskar KM, Schwartz RS, LeDuc PR
Journal Article Molecular crowding shapes gene expression in synthetic cellular nanosystems 2013 • Nature Nanotechnology • 8(8):602-608 Tan C, Saurabh S, Bruchez MP, Schwartz R, LeDuc P
Journal Article Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles 2013 • IEEE/ACM Transactions on Computational Biology and Bioinformatics • 10(6):1422-1431 Subramanian A, Shackney S, Schwartz R
Conference Phylogenetic analysis of multiprobe fluorescence <i>in situ</i> hybridization data from tumor cell populations 2013 • Bioinformatics • 29(13):189-198 Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schaeffer AA, Schwartz R
Conference Phylogenetic models of tumor progression from fluorescence in situ hybridization (FISH) data on many single cells of a solid tumor. 2013 • Cancer Research • 73(8): Chowdhury SA, Schaeffer AA, Shackney SE, Wangsa D, Heselmeyer-Haddad K, Ried T, Schwartz R
Chapter Tumor Phylogenetics in the NGS Era: Strategies, Challenges, and Future Prospects 2013 335-357 Subramanian A, Shackney S, Schwartz R
Journal Article A Report of the Curriculum Task Force of the ISCB Education Committee 2012 • PLoS Computational Biology • 8(6): Welch LR, Schwartz R, Lewitter F
Journal Article Biological colloid engineering: Self-assembly of dipolar ferromagnetic chains in a functionalized biogenic ferrofluid 2012 • Applied Physics Letters • 101(6): Ruder WC, Hsu C-PD, Edelman BDJ, Schwartz R, LeDuc PR
Conference Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data 2012 90-97 Tsai M-C, Blelloch G, Schwartz R, Ravi R
Journal Article Inference of robust tumor phylogenetic markers from multi-sample data 2012 • Cancer Research • 72: Subramanian A, Schwartz R, Shackney S
Journal Article Inference of Tumor Phylogenies from Genomic Assays on Heterogeneous Samples 2012 • Journal of Biomedicine and Biotechnology Subramanian A, Shackney S, Schwartz R
Book Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface 2012 • Lecture Notes in Computer Science • 7292 LNBI: Bleris L, Mǎndoiu I, Schwartz R, Wang J
Journal Article Modeling Nuclear Blebs in a Nucleoskeleton of Independent Filament Networks 2012 • Cellular and Molecular Bioengineering • 5(1):73-81 Wren NS, Zhong Z, Schwartz RS, Dahl KN
Conference Novel Multi-sample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles 2012 • Lecture Notes in Computer Science • 7292:250-262 Subramanian A, Shackney S, Schwartz R
Journal Article Single-Cell Genetic Analysis of Ductal Carcinoma <i>in Situ</i> and Invasive Breast Cancer Reveals Enormous Tumor Heterogeneity yet Conserved Genomic Imbalances and Gain of <i>MYC</i> during Progression 2012 • American Journal of Pathology • 181(5):1807-1822 Heselmeyer-Haddad K, Garcia LYB, Bradley A, Ortiz-Melendez C, Lee W-J, Christensen R, Prindiville SA, Calzone KA, Soballe PW, Hu Y, Chowdhury SA, Schwartz R, Schaeffer AA, Ried T
Journal Article Stochastic steady state gain in a gene expression process with mRNA degradation control 2012 • Journal of the Royal Society Interface • 9(72):1589-1598 Kuwahara H, Schwartz R
Journal Article Surveying Capsid Assembly Pathways through Simulation-Based Data Fitting 2012 • Biophysical Journal • 103(7):1545-1554 Xie L, Smith GR, Feng X, Schwartz R
