Journal Article A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure 2011 • IEEE/ACM Transactions on Computational Biology and Bioinformatics • 8(4):918-928 Tsai M-C, Blelloch G, Ravi R, Schwartz R
Journal Article An Optimization-Based Sampling Scheme for Phylogenetic Trees 2011 • Journal of Computational Biology • 18(11):1599-1609 Misra N, Blelloch G, Ravi R, Schwartz R
Conference An Optimization-Based Sampling Scheme for Phylogenetic Trees 2011 • Lecture Notes in Computer Science • 6577:252-+ Misra N, Blelloch G, Ravi R, Schwartz R
Conference Approximate Dynamic Programming using Halfspace Queries and Multiscale Monge Decomposition 2011 • Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms • 1675-1682 Miller GL, Peng R, Schwartz R, Tsourakakis C
Journal Article Approximation algorithms for speeding up dynamic programming and denoising aCGH data 2011 • Journal of Experimental Algorithmics • 16:1.1-1.27 Tsourakakis CE, Peng R, Tsiarli MA, Miller GL, Schwartz R
Journal Article Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-State Phylogeny 2011 • Journal of Computational Biology • 18(3):445-457 Misra N, Blelloch G, Ravi R, Schwartz R
Conference Inference of tumor phylogenies from genomic assays on heterogeneous samples 2011 172-181 Subramanian A, Shackney S, Schwartz R
Conference Phylogenetics of Heterogeneous Samples 2011 • Lecture Notes in Computer Science • 6674:1-1 Schwartz R
Journal Article Response of an actin filament network model under cyclic stretching through a coarse grained Monte Carlo approach 2011 • Journal of Theoretical Biology • 274(1):109-119 Kang J, Steward RL, Kim Y, Schwartz RS, LeDuc PR, Puskar KM
Journal Article Toward a Unified Model of Molecular Crowding: A Regression Approach to Predict Equilibria and Kinetics of Assembly Systems in Crowded Environments 2011 • Biophysical Journal • 100(3):613a Lee B, LeDuc PR, Schwartz R
Journal Article Towards novel marker discovery from phylogenetic analysis of heterogeneous tumor samples 2011 • Cancer Research • 71: Subramanian A, Shackney S, Schwartz R
Journal Article Unified regression model of binding equilibria in crowded environments 2011 • Scientific Reports • 1: Lee B, LeDuc PR, Schwartz R
Conference A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure 2010 • Lecture Notes in Computer Science • 6053:167-+ Tsai M-C, Blelloch G, Ravi R, Schwartz R
Journal Article A parameter estimation technique for stochastic self-assembly systems and its application to human papillomavirus self-assembly 2010 • Physical Biology • 7(4): Kumar MS, Schwartz R
Journal Article Applying unmixing to gene expression data for tumor phylogeny inference 2010 • BMC Bioinformatics • 11: Schwartz R, Shackney SE
Preprint Approximate Dynamic Programming using Halfspace Queries and Multiscale Monge decomposition 2010 Miller GL, Peng R, Schwartz R, Tsourakakis CE
Preprint CGHTRIMMER: Discretizing noisy Array CGH Data 2010 Tsourakakis CE, Tolliver D, Tsiarli MA, Shackney S, Schwartz R
Journal Article Discrete, continuous, and stochastic models of protein sorting in the Golgi apparatus 2010 • Physical Review E: Statistical, Nonlinear, and Soft Matter Physics • 81(1): Gong H, Guo Y, Linstedt A, Schwartz R
Conference Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny 2010 • Lecture Notes in Computer Science • 6044:369-+ Misra N, Blelloch G, Ravi R, Schwartz R
Conference RESPONSE OF AN ACTIN FILAMENT NETWORK MODEL UNDER CYCLIC STRETCHING THROUGH A COARSE GRAINED MONTE CARLO APPROACH 2010 • PROCEEDINGS OF THE ASME SUMMER BIOENGINEERING CONFERENCE, 2010 • 375-376 Kang J, Steward RL, Kim Y, Schwartz R, Puskar KM, LeDuc PR
Conference Robust unmixing of tumor states in array comparative genomic hybridization data 2010 • Bioinformatics • 26(12):i106-i114 Tolliver D, Tsourakakis C, Subramanian A, Shackney S, Schwartz R
Conference Simulation Study of Binding Chemistry in Crowded Conditions Using Two- and Three-Dimensional Stochastic Off-Lattice Models 2010 • Biophysical Journal • 98(3):58A-58A Lee B, Leduc PR, Schwartz R
Journal Article THEORY AND ALGORITHMS FOR THE HAPLOTYPE ASSEMBLY PROBLEM 2010 • Communications in Information and Systems • 10(1):23-38 Schwartz R
Conference Tiling Binary Matrices in Haplotyping: Complexity, Models and Algorithms 2010 • PROCEEDINGS OF THE PRAGUE STRINGOLOGY CONFERENCE 2010 • 89-102 Lancia G, Rizzi R, Schwartz R
Preprint Generalized Buneman pruning for inferring the most parsimonious multi-state phylogeny 2009 Misra N, Blelloch G, Ravi R, Schwartz R
